Haruo Negishi
Hiroharu Banno
Shoko Kojima
Hiro Takahashi
Endang Semiarti
Chubu University
Bioscience & Biotechnology
Research Institute for Biological Functions
Chiyoko Machida, Ph. D. Professor, Dept. of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University
  1. Machida, C., Onouchi, H., Semiarti, E., Ishikawa, T. and Machida, Y. : Use of the R-RS site-specific recombination system in plants. Plant Molecular Biology Manual (ed. by Gelvin, S.B.) published by Kluwer Academic Publishers (Netherland) N2, 1-23 (2000)
  2. Nakagawa, Y., Machida, C., Machida, Y. and Toriyama, K. : Frequency and pattern of transposition of the maize transposable element Ds in transgenic plants. Plant & Cell Physiol. , 41, 733-742 (2000)
  3. Hamada, S., Onouchi, H., Tanaka, H., Kudo, M., Liu, Y.-G., Shibata, D., Machida, C. and Machida, Y. : Mutations in the WUSCHEL gene of Arabidopsis thaliana result in the development of shoot without juvenile leaves. Plant J., 24, 91-103 (2000)
  4. Nakagawa, Y., Machida, C., Machida, Y. and Toriyama, K. : A system to induce deletion of genomic sequences using R/RS site-specific recombination and the Ac transposon in transgenic rice plants. Theoretical and Applied Genetics, 102, 1136-1141 (2001)
  5. Semiarti, E., Ueno, Y., Iwakawa H., Tsukaya, H., Machida, C. and Machida, Y. : The ASYMMETRIC LEAVES2 (AS2) gene of Arabidopsis thaliana regulates lamina formation and is required for patterning of leaf venation. Molecular Breeding of Woody Plants (N. Morohoshi and A. Komamine, editors) 2001 Elsevier Science B. V. pp63-68.
  6. Semiarti, E., Onouchi, H., Torikai, S., Ishikawa, T., Machida, Y. and Machida, C. : The transposition pattern of the Ac element in tobacco cultured cells. Genes and Genetic Systems, 76, 131-139 (2001)
  7. Semiarti, E., Ueno, Y., Tsukaya, H., Iwakawa, H., Machida, C. and Machida, Y. : The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates lamina formation, establishment of venation and repression of meristem-related homeobox genes in the leaf. Development, 128, 1771-1783 (2001)
  8. Tanaka, H., Onouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura M., Machida, C. and Machida, Y. : A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants. Development, 128, 4681-4689 (2001)
  9. Tanaka, H., Watanabe, M. Watanabe, D., Tanaka, T., Machida, C. and Machida, Y. : ACR4, a putative receptor kinase gene of Arabidopsis thaliana that is expressed in the outer cell layers of embryos and plants, is involved in proper embryogenesis. Plant & Cell Physiol., 43, 419-428 (2002)
  10. Iwakawa, H., Ueno, Y., Semiarti, E., Onouchi, H., Kojima, S., Tsukaya, H., Hasebe, Y., Soma, T., Ikezaki, M., Machida, C. and Machida, Y. : The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant & Cell Physiol., 43, 467-478 (2002)
  11. Ishikawa, T., Machida, C., Yoshioka, Y., Kitano, H. and Machida, Y. : The GLOBULAR ARREST1 gene, which is involved in the biosynthesis of folates, is essential for late embryogenesis in Arabidopsis thaliana. Plant J., 33, 235-244 (2003)
  12. Machida, C., Iwakawa, H., Ueno, Y., Semiarti, E., Tsukaya, H., Hasebe, M., Kojima, S. and Machida, Y. : Formation of a symmetric flat leaf lamina in Arabidopsis Morphogenesis and Pattern Formation in Biological Systems: Experiments and Models (ed. By Sekimura T., Noji, N., Ueno, N. and Maini, P.K.) published by Springer-Verlag 177-187 (2003)
  13. Machida, C., Ueno, Y.and Machida, Y. : Function of the ASYMMETRIC LEAVES1 and ASYMMETRIC LEAVES2 genes in leaf development of Arabidopsis. Plant Morphology, 15, 30-39 (2003)
  14. Tanaka, T., Tanaka, H., Watanabe, M., Machida, C. amd Machida, Y. : A new method for rapid visualization of defects in leaf cuticle reveals five intrinsic patterns of surface defects in Arabidopsis. Plant J., 37,139-146 (2004)
  15. Watanabe, M., Tanaka, H., Machida, C., Watanabe, D. and Machida, Y. : The ACR4 receptor-like kinase is required for surface formation of epidermis-related tissues in Arabidopsis thaliana. Plant J., 39, 298-308 (2004)
  16. Tanaka, T., Ishikawa, M., Kitamura, S., Takahashi, U., Soyano, T., Machida, C. and Machida, Y. : The AtNACK1/HINKEL and STUD/TETRASPORE/AtNACK2 genes, which encode functionally redundant kinesins, are essential for cytokinesis in Arabidopsis. Genes to Cells, 9, 1199-1211 (2004)
  17. Kitakura, S., Ueno, Y., Terakura, S., Machida, C. and Machida, Y. : Mechanism of proliferation of plant cells that is induced by oncogene 6b from Agrobacterium tumefaciens: interaction of the 6b protein with a putative transcription factor in tobacco cells. Endocytobiosis and Cell Research, 15, 179-180 (2004)
  18. Terakura, S., Kitakura, S., Ishikawa, M., Ueno, Y., Fujita, T., Machida, C., Wabiko, H. and Machida, Y. : Oncogene 6b from Agrobacterium tumefaciens induces abaxial cell division at late stages of leaf development and modifies vascular development in petioles. Plant & Cell Physiol., 47, 664-672 (2006)
  19. Ueno, Y., Ishikawa, T., Watanabe, K., Terakura, S., Iwakawa, H., Okada, K., Machida, C. and Machida, Y. : Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis. Plant Cell, 19, 445-57 (2007)
  20. Tanaka, H., Watanabe, M., Sasabe, M., Hiroe, T., Tanaka, T., Tsukaya, H., Machida, C. and Machida, Y. : Novel receptor-like kinase ABNORMAL LEAF SHAPE2 controls embryonic patterning and post-embryonic development of shoot organs through epidermal differentiation in Arabidopsis. Development, 134, 1643-1652 (2007)
  21. Iwakawa, H., Iwasaki, M., Kojima, S., Ueno, Y., Soma, T., Tanaka, H., Semiarti, E., Machida, Y. and Machida, C. : Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves. Plant J., 51, 173-184 (2007)
  22. Semiarti, E., Indrianto, A., Purwantoro, A., Isminingsih, S., Suseno, N., Ishikawa, T., Yoshioka, Y., Machida, Y. and Machida, C. : Agrobacterium-mediated transformation of the wild orchid species . Phalaenopsis amabilis. Plant Biotechnology, 24, 265-272 (2007)
  23. Terakura, S., Ueno, Y., Tagami, H., Kitakura, S., Machida, C., Wabiko, H., Aiba, H., Otten, L., Tsukagoshi, H., Nakamura, K. and Machida, Y. : An oncoprotein from the plant pathogen Agrobacterium has histone-chaperone-like activity. Plant Cell, 19,2855-2865(2007).
  24. Kitakura, S., Terakura, S., Yoshioka, Y., Machida, C., Machida, Y. : Interaction between Agrobacterium tumefaciens oncoprotein 6b and a tobacco nucleolar protein that is homologous to TNP1 encoded by a transposableelement of Antirrhinum majus. J. Plant Res. 121, 425-433(2008)
  25. Ishikawa, T., Machida, C., Yoshioka, Y., Ueda, T., Nakano, A., Machida, Y. : EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgicomplex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana. Genes to Cells 13, 521-535 (2008)
  26. Yang, J-Y., Iwasaki, M., Machida, C., Machida, Y., Zhou, X., Chua, N-H., : betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses. Genes & Development 22, 2564-2577 (2008)
  27. Takahashi, H., Iwakawa, H., Nakao, S., Ojio, T., Morishita, R., Morikawa, S., Machida, Y., Machida, C., Kobayashi, T. : Knowledge-based Fuzzy Adaptive Resonance Theory and its Application to the Analysis of Gene Expression in Plants. Journal of Bioscience and Bioengneering 106, 587-593 (2008)
  28. Semiarti E, Indrianto A, Purwantoro A, Isminingsih S, Suseno N, Machida Y, Kojima S. and Machida C.: Development of methods for Agrobacterium-mediated transformation of the wild orchid species Phalaenopsis amabilis and its application. Proceedings of Nagoya International Orchid Congress 2009, 1-7 (2009)
  29. Matsumura, Y., Iwakawa, H., Machida, Y., Machida, C.: Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana and functional and molecular comparisons between AS2 and other family members. Plant J. 58(3):525-37(2009)
  30. Ikezaki, M., Kojima, M., Sakakibara, H., Kojima, S., Ueno, Y., Machida, C., Machida, Y. :Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis thaliana: KNOX genes control five morphological events. Plant J. 61, 70-82 (2010)
  31. Semiarti E., Indrianto A., Purwantoro A., Martiwi I. N. A., Feroniasanti Y. M. L., Nadifah F., Mercuriana I. S., Dwiyani R., Iwakawa H., Yoshioka Y., Machida Y. and Machida C. High-frequency genetic transformation of Phalaenopsis amabilis orchids using tomato extract-enriched medium for preculture of protocorms. J. of Horticultural Science & Biotechnology accepted.
  32. Semiarti E., Indrianto A., Suyono E.A., Nurwulan R.L., Restiani R., Machida Y. and Machida C.: Genetic Transformation of The Indonesian Black Orchid (Coelogyne pandurata Lindley) through Agrobacterium tumefaciens for Micropropagation Proceedings of Nagoya International Orchid Congress 2010, in press.
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