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  1. Onda, Y., Matsumura, T., Kimata-Ariga, Y., Sakakibara, H., Sugiyama, T. and Hase, T. : Differential interaction of maize root ferredoxin:NADP+ oxidoreductase with photosynthetic and nonphotosynthetic ferredoxin isoproteins. Plant Physiol., 123, 1037-1045 (2000)
  2. Deji, A., Sakakibara, H., Ishida, Y., Yamada, S., Komari, T., Kubo, T. and Sugiyama, T. : Genomic organization and transcriptional regulation of maize ZmRR1 and ZmRR2 encoding cytokinin-inducible response regulators. Biochim. Biophys. Acta ,1492, 216-220 (2000)
  3. Sakakibara, H., Taniguchi, M. and Sugiyama, T. : His-Asp phosphorelay signaling: a communication avenue between plants and their environment. Plant Mol. Biol., 42, 273-278 (2000)
  4. Ueno, Y., Imanari, E., Emura, J., Yoshizawa-Kumagaye, K., Nakajima, K., Inami, K., Shiba, T., Sakakibara, H., Sugiyama, T. and Izui, K. : Immunological analysis of the phosphorylation state of maize C4-form phosphoenolpyruvate carboxylase with specific antibodies raised against a synthetic phosphorylated peptide. Plant J., 21, 17-26 (2000)
  5. Takei, K., Sakakibara, H., and Sugiyama, T. : Identification of genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzyme, in Arabidopsis thaliana. J. Biol. Chem., 276, 26405-26410 (2001)
  6. Takei, K., Sakakibara, H., Taniguchi, M. and Sugiyama, T. : Nitrogen-dependent accumulation of cytokinins in root and the translocation to leaf: implication of cytokinin species that induces gene expression of maize response regulator. Plant Cell Physiol., 42, 85-93 (2001)
  7. Sakakibara, H. and Takei, K. : Identification of cytokinin biosynthesis genes in Arabidopsis: a breakthrough for understanding the metabolic pathway and the regulation in higher plants. J. Plant Growth Regul., 21, 17-23 (2002)
  8. Sugiharto, B., Ermawati, N., Mori, H., Aoki, K., Yonekura-Sakakibara, K., Yamaya, Y., Sugiyama, T. and Sakakibara, H. : Identification and characterization of a gene encoding drought-inducible protein localizing in the bundle sheath cell of sugarcane. Plant Cell Physiol., 43, 350-354 (2002)
  9. Takei, K., Takahashi, T., Sugiyama, T., Yamaya, T. and Sakakibara, H. : Multiple routes communicating nitrogen availability from roots to shoots: a signal transduction pathway mediated by cytokinin. J. Exp. Bot., 53, 971-977 (2002)
  10. Deji, A., Sakakibara, H., Okumura, S., Matsuda, T., Ishida, Y., Yamada, S., Komari, T., Kubo, T. Yamaya, T. and Sugiyama, T. : Accumulation of maize response regulator proteins in mesophyll cells after cytokinin treatment. Biosci. Biotech. Biochim., 66,1853-1858 (2002)
  11. Ohkama, N., Takei, K., Sakakibara, H., Hayashi, H., Yoneyama, T. and Fujiwara, T. : Regulation of sulfur-responsive gene expression by exogenously applied cytokinins in Arabidopsis thaliana. Plant Cell Physiol., 43, 1493-1501 (2002)
  12. Sakakibara, H. : Differential response of genes for ferredoxin and ferredoxin:NADP+ oxidoreductase to nitrate and light in maize leaves. J. Plant Physiol., 160, 65-70 (2003)
  13. Asakura, Y., Hagino, T., Ohta, Y., Aoki, K., Yonekura-Sakakibara, K., Deji, A., Yamaya, T., Sugiyama, T. and Sakakibara, H. : Molecular characterization of His-Asp phosphorelay signalling factors in maize leaves: Implications of the signal divergence by cytokinin-inducible response regulators in the cytosol and the nuclei. Plant Mol. Biol., 52, 331-341 (2003)
  14. Gawronska, H., Deji, A., Sakakibara, H. and Sugiyama, T. : Hormone-mediated nitrogen signaling in plants: Implication of participation of abscisic acid in negative regulation of cytokinin-inducible expression of maize response regulator. Plant Physiol. Biochem., 41, 605-610 (2003)
  15. Sakakibara, H. : Nitrate-specific and cytokinin-mediated nitrogen signaling pathways in plants. J. Plant Res., 116, 253-257 (2003)
  16. Takei, K., Dekishima, Y., Eguchi, T., Yamaya, T. and Sakakibara, H. : A new method for enzymatic preparation of isopentenyladenine-type and trans-zeatin-type cytokinins with radioisotope-labeling. J. Plant Res., 116, 259-263 (2003)
  17. Takei, K., Yamaya, T. and Sakakibara, H. : A method for separation and determination of cytokinin nucleotides from plant tissues. J. Plant Res., 116, 265-269 (2003)
  18. Lee, J.H., Takei, K., Sakakibara, H., Cho, H.S., Kim D.M., Kim, Y.S., Min, S.R., Kim, W.T., Son, D.Y., Lim, Y.P., and Pai, H.S. : CHRK1, a chitinase-related receptor-like kinase, plays a role in plant development and cytokinin homeostasis in tobacco. Plant Mol. Biol., 53, 877-890 (2003)
  19. Yonekura-Sakakibara, K., Kojima, M., Yamaya, T. and Sakakibara, H.: Molecular characterization of cytokinin-responsive histidine kinases in maize: Differential ligand preferences and response to cis-zeatin. Plant Physiol., 134, 1654-1661 (2004)
  20. Kasahara, H., Takei, K., Ueda, N., Hishiyama, S., Yamaya, T., Kamiya, Y., Yamaguchi, S. and Sakakibara, H. : Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis. J. Biol. Chem., 279, 14049-14054 (2004)
  21. Takei, K., Ueda, N., Aoki, K., Kuromori, T., Hirayama, T., Shinozaki, K., Yamaya, T. and Sakakibara, H. : AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant Cell Physiol., 45, 1053-1062 (2004)
  22. Kiba, T., Aoki, K., Sakakibara, H. and Mizuno, T. : A novel class of Arabidopsis response regulator genes, the ectopic expression of which results in phenocopy of the wol cytokinin-receptor deficient mutant. Plant Cell Physiol., 45, 1063-1077 (2004)
  23. Takei, K., Yamaya, T. and Sakakibara, H. : Arabidopsis CYP735A1 and CYP735A2 encode cytokinin hydroxylases that catalyze the biosynthesis of trans-zeatin. J. Biol. Chem., 279, 41866-41872 (2004)
  24. Sugawara, H., Kawano, Y., Hatakeyama, T., Yamaya, T., Kamiya, N. and Sakakibara, H. : Crystal structure of a histidine-containing phosphotransfer protein ZmHP2 from maize. Protein Sci., 14, 202-208 (2005)
  25. Nakagawa, H., Jiang, C.J., Sakakibara, H., Kojima, M., Ajisaka, H., Nishijima, T., Koshioka, M., Homma, T., Mander, L.N. Honda, I. and Takatsuji, H. : Overexpression of a zinc-finger gene LIF alters cytokinin metabolism and enhances outgrowth of lateral shoots in petunia. Plant J., 41, 512-523 (2005)
  26. Kiba, T., Naitou, T., Koizumi, N., Yamashino, T., Sakakibara, H. and Mizuno, T. : Combinatorial microarray analysis revealing Arabidopsis genes implicated in cytokinin responses through the His-to-Asp phosphorelay circuitry. Plant Cell Physiol., 46, 339-355 (2005)
  27. Mok, M.C., Martin, R.C., Dobrev, P.I., Vankov_, R., Ho, P.S., Yonekura-Sakakibara, K., Sakakibara, H. and Mok, D.W.S. : Topolins and hydroxylated thidiazuron derivatives are substrates of cytokinin O-glucosyltransferase with position specificity related to receptor recognition. Plant Physiol., 137, 1057-1066 (2005)
  28. Sugawara, H., Kawano, Y., Hatakeyama, T., Yamaya, T., Kamiya, N. and Sakakibara, H. : Crystal structure of a histidine-containing phosphotransfer protein ZmHP2 from maize. Protein Sci., 14, 202-208 (2005)
  29. Nakagawa, H., Jiang, C.J., Sakakibara, H., Kojima, M., Ajisaka, H., Nishijima, T., Koshioka, M., Homma, T., Mander, L.N. Honda, I. and Takatsuji, H. : Overexpression of a petunia zinc-finger gene alters cytokinin metabolism and plant forms. Plant J., 41, 512-523 (2005)
  30. Kiba, T., Naitou, T., Koizumi, N., Yamashino, T., Sakakibara, H. and Mizuno, T. : Combinatorial microarray analysis revealing Arabidopsis genes implicated in cytokinin responses through the His-to-Asp phosphorelay circuitry. Plant Cell Physiol., 46, 339-355 (2005)
  31. Mok, M.C., Martin, R.C., Dobrev, P.I., Vanková, R., Ho, P.-S., Yonekura-Sakakibara, K., Sakakibara, H. and Mok, D.W.S. : Topolins and hydroxylated thidiazuron derivatives are substrates of cytokinin O-glucosyltransferase with position specificity related to receptor recognition. Plant Physiol., 137, 1057-1066 (2005)
  32. Sugawara, H., Yamaya, T. and Sakakibara, H. : Crystallization and preliminary X-ray diffraction study of the histidine-containing phosphotransfer protein ZmHP1 from maize. Acta Cryst., F 61, 366-368 (2005)
  33. Hirose, N., Makita, N., Yamaya, T. and Sakakibara, H. : Functional characterization and expression analysis of a gene, OsENT2, encoding an equilibrative nucleoside transporter in Oryza sativa suggest a function in cytokinin transport. Plant Physiol., 138, 196-206 (2005)
  34. Sakakibara, H., Kasahara, H., Ueda, N., Kojima, M., Takei, K., Hishiyama, S., Asami, T., Okada, K., Kamiya, Y., Yamaya, T., and Yamaguchi, S. : Agrobacterium tumefaciens increases cytokinin production in plastids by modifying the biosynthetic pathway in the host plant. Proc. Natl. Acad. Sci. U.S.A., 102, 9972-9977 (2005)
  35. Sun, J.-Q., Hirose, N., Wang, X.-C., Wen, P., Xue, L., Sakakibara, H. and Zuo, J.-R. : The Arabidopsis SOI33/AtENT8 gene encodes a putative equilibrative nucleoside transporter that is involved in cytokinin transport in planta. J. Integr. Plant Biol. ,47, 588-603 (2005)
  36. Ashikari, M., Sakakibara, H., Lin, S.-Y., Yamamoto, T., Takashi, T., Nishimura, A., Angeles, E. R., Qian, Q., Kitano, H. and Matsuoka, M. : Cytokinin oxidase regulates rice grain production, Science, 309, 741-745 (2005)
  37. Tanaka, M., Takei, K., Kojima, M., Sakakibara, H. and Mori, H. : Auxin controls local cytokinin biosynthesis in the nodal stem in apical dominance. Plant J., 45, 1028-1036 (2006)
  38. Kuroha, T., Ueguchi, C., Sakakibara, H. and Satoh, S. : Cytokinin receptors are required for normal development of auxin-transporting vascular tissues in the hypocotyl but not in adventitious roots. Plant Cell Physiol., 47, 234-243 (2006)
  39. Aoki, K., Suzui, N., Fujimaki, S., Dohmae, N., Yonekura-Sakakibara, K., Fujiwara, T., Hayashi, H., Yamaya, T. and Sakakibara, H. : Destination-selective long-distance movement of phloem proteins. Plant Cell, 17, 1801-1814 (2005)
  40. Itouga, M., Kato, Y., Yamaguchi, I., Ono, Y. and Sakakibara, H. : Phytoremediation using bryophytes, 1.: Characterization of copper accumulation and remediation of lead from fry ash using Scopelophila cataractae (Mitt.) Broth. Hikobia, 14, 263-271 (2005) (in Japanese with English abstract)
  41. Itouga, M., Kato, Y., Deguchi, H., Ono, Y. and Sakakibara, H. : Genetic diversity, sexual condition and branching pattern within Reboulia hemisphaerica (Marchantiales; Hepaticae) in Japan. Hikobia, 14, 251-261 (2005) (in Japanese with English abstract)
  42. Unno, H., Uchida, T., Sugawara, H., Kurisu, G., Sugiyama, T., Yamaya, T., Sakakibara, H., Hase, T. and Kusunoki, M. : Atomic structure of maize glutamine synthetase: a key enzyme for plant productivity. J. Biol. Chem., 281, 29287-29296 (2006)
  43. Sakamoto, T., Sakakibara, H., Kojima, M., Yamamoto, Y., Nagasaki, H., Inukai, Y., Sato, Y. and Matsuoka, M. : Ectopic expression of KNOX homeodomain protein induces expression of cytokinin biosynthesis gene in rice. Plant Physiol. ,142, 54-62 (2006)
  44. Itouga, M., Suzuki, T., Komatsu, Y., Yamaguchi, I., Shiraishi, T., Ono, Y. and Sakakibara, H. : Effect of some leaching waters from ashes of municipal waters on protonemal cell division of Funaria hygrometrica Hedw. Bryol. Res., 9, 78-83 (2006) (in Japanese with English abstract)
  45. Martin, A., Lee, J., Kichey, T., Gerentes, D., Zivy, M., Tatout, C., Dubois, F., Balliau, T., Valote, B., Davanture, M., TercE-Laforgue, T., QuillerE, I., Coque, M., Gallais, A., Gonzalez-Moro, M., Bethencourt, L., Habash, D. Z., Lea, P. J., Charcosset, A., Perez, P., Murigneux, A., Sakakibara, H., Edwards, K. J. and Hirel, B. : Two cytosolic glutamine synthetase isoforms of maize (Zea mays L.) are specifically involved in the control of grain production. Plant Cell, 18, 3252-3274 (2006)
  46. Itouga, M., Komatsu-Kato, Y., Yamaguchi, I., Ono, Y. and Sakakibara, H. : Phytoremediation using bryophytes, 2.: Bryofiltration of copper in water using two species of Scopelophila. Hikobia ,14, 413-418 (2006)
  47. () Sudo, E., Itouga, M., Yoshida, K., Ono, Y. and Sakakibara, H. : Mitigation of Cu-toxicity through gbryo-filtrationh: An evaluation with rice leaf photosynthesis and gene expression profile. Hikobia, 14, 419-429 (2006)
  48. Yokoyama, A., Yamashino, T., Amano, Y., Tajima, Y., Imamura, A., Sakakibara, H. and Mizuno, T. : Type-B ARR transcription factors, ARR10 and ARR12, are implicated in cytokinin-mediated regulation of protoxylem differentiation in roots of Arabidopsis thaliana. Plant Cell Physiol. ,48, 84-96 (2007)
  49. () Kurakawa, T., Ueda, N., Maekawa, M., Kobayashi, K., Kojima, M., Nagato, Y., Sakakibara, H. and Kyozuka, J. : Direct control of shoot meristem activity by a cytokinin activating enzyme. Nature ,445, 652-655 (2007)
  50. Iwama, A., Yamashino, T., Tanaka, Y., Sakakibara, H., Kakimoto, T., Hirayama, T., Sato, S., Kato, T., Tabata, S., Nagatani, A. and Mizuno, T. : AHK5 His-kinase regulates root elongation through an ETR1-dependently integrated abscisic acid and ethylene signaling pathway in Arabidopsis thaliana. Plant Cell Physiol., 48, 375-380 (2007)
  51. Hirose, N., Makita, N., Kojima, M. Kamada-Nobusada, T. and Sakakibara, H. : Over-expression of a type-A response regulator alters rice morphology and cytokinin metabolism. Plant Cell Physiol., 48, 523-539 (2007)
  52. Naito, T., Yamashino, T., Kiba, T., Koizumi, N., Kojima, M., Sakakibara, H. and Mizuno, T. : A link between cytokinin and ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) that belongs to the AS2/LOB (LATERAL ORGAN BOUNDARIES) family genes in Arabidopsis thaliana. Biosci. Biotech. Biochem. 71: 1269-1278 (2007).
  53. Suzuki, M., Latshaw, S., Sato, Y., Settles, A. M., Koch, K. E., Hannah, L. C., Kojima, M., Sakakibara, H. and McCarty, D. R. : The maize Viviparous8 locus, encoding a putative AMP1-like peptidase, regulates ABA accumulation and coordinates embryo and endosperm development. Plant Physiol. 146:1193-1206 (2008)
  54. Igari, K., Endo, S., Hibara, K., Aida, M., Sakakibara, H., Kawasaki, Y. and Tasaka, M. : Constitutive activation of a CC-NB-LRR protein alters morphogenesis through the cytokinin pathway in Arabidopsis. Plant J. 55: 14-27 (2008)
  55. Goda, H., Sasaki, E., Akiyama, K., Maruyama, A., Nakabayashi, K., Li, W., Ogawa, M., Yamauchi, Y., Preston, J., Aoki, K., Kiba, T., Takatsuto, S., Fujioka, S., Asami, T., Nakano, T., Kato, H., Mizuno, T., Sakakibara, H., Yamaguchi, S., Nambara, E., Kamiya, Y., Takahashi, H., Hirai, M., Sakurai, T., Shinozaki, K., Saito, K., Yoshida, S. and Shimada, Y. : The AtGenExpress hormonomal and chemical-treatment data set: the experiment design, data evaluation, model data analysis, and data access. Plant J. 55: 526-542 (2008)
  56. Sudo, E., Itouga, M., Yoshida-Hatanaka, K., Ono, Y. and Sakakibara, H. : Gene expression and sensitivity in response to copper stress in rice leaves. J. Exp. Bot. 59: 3465-3474 (2008)
  57. Hamaguchi, A., Yamashino, T., Koizumi, N., Kiba, T., Kojima, M., Sakakibara, H. and Mizuno, T. : A small subfamily of Arabidopsis RADISLIS-LIKE SANT-MYB genes: A link to the HOOKLESS1-mediated signal transduction during early morphogenesis. Biosci. Biotech. Biochem. 72: 2687-2696 (2008)
  58. Kamada-Nobusada, T., Hayashi, M., Fukazawa, M., Sakakibara, H. and Nishimura, M. : A putative peroxisomal polyamine oxidase, AtPAO4, is involved in the polyamine catabolism in Arabidopsis thaliana. Plant Cell Physiol. 49: 1272-1282 (2008)
  59. Hirano, K., Aya, K., Hobo, T., Ueguchi-Tanaka, M., Sakakibara, H., Kojima, M. and Matsuoka, M. : Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice Plant Cell Physiol. 49: 1429-1450 (2008)
  60. Kondou, Y., Higuchi, M., Takahashi, S., Sakurai, T., Ichikawa, T., Kuroda, H., Yoshizumi, T., Tsumoto, Y., Horii, Y., Kawashima, M., Hasegawa, Y., Kuriyama, T., Matsui, K., Kusano, M., Albinsky, D., Takahashi, H., Nakamura, Y., Suzuki, M., Sakakibara, H., Kojima, M., Akiyama, K., Kurotani, A., Seki, M., Fujita, M., Enju, A., Yokotani, N., Saitou, T., Ashidate, K., Fujimoto, N., Ishikawa, Y., Mori, Y., Nanba, R., Takata, K., Uno, K., Sugano, S., Natsuki, J., Dubouzet, J. G., Maeda, S., Ohtake, M., Mori, M., Oda, K., Takatsuji, H., Hirochika, H. and Matsui, M. : Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J. In press. DOI: 10.1111/j.1365-313X.2008.03733.x (2009)
  61. Nakamichi, N., Kusano, M., Fukushima, A., Kita, M., Ito, S., Tohge, T., Yamashino, T., Saito, K., Sakakibara, H. and Mizuno, T. (2009) Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol. 50: 447-462.
  62. Kawakatsu, T., Taramino, G., Itoh, J., Allen, J., Sato, Y., Hong, S.-K., Yule, R., Nagasawa, N., Kojima, M., Kusaba, M., Sakakibara, H., Sakai, H. and Nagato, Y. (2009) PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice. Plant J. 58: 1028-1040.
  63. Lee, B.-H., Yang, Y., Gallavotti, A., Kojima, M., Travencolo, B. A., Costa, L. F., Sakakibara, H. and Jackson, D. (2009) Studies of aberrant phyllotaxy1 mutants of maize indicate complex interactions between auxin and cytokinin signaling in the shoot apical meristem. Plant Physiol. 150: 205-216.
  64. Kojima, M., Kamada-Nobusada, T., Komatsu, H., Takei, K., Kuroha, T., Mizutani, M., Ashikari, M., Ueguchi-Tanaka, M., Matsuoka, M., Suzuki, K. and Sakakibara, H. (2009) High-throughput and high-sensitive analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.Plant Cell Physiol. 50: 1201-1214. (Special issue for Omics and Bioinformatics)
  65. Fukushima, A., Kusano, M., Nakamichi, N., Kobayashi, M., Hayashi, N., Sakakibara, H., Mizuno, T. and Saito, T. (2009) Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc. Natl. Acad. Sci. U.S.A. 106: 7251-7256.
  66. Nakamichi, N., Fukushima, A., Kusano, M., Sakakibara, H., Mizuno, T. and Saito, T. (2009) Linkage between circadian clock and tricarboxylic acid cycle in Arabidopsis. Plant Signaling Behavior 4: 660-662.
  67. Hattori, Y., Nagai, K., Furukawa, S., Song, X.-J., Kawano, R., Sakakibara, H., Wu, J.-Z., Matsumoto, T., Yoshimura, A., Kitano, H., Mori, H., Matsuoka, M. and Ashikari, M. (2009) The ethylene response factors Snorkel1 and Snorkel2 allow rice to adapt to deep water. Nature 460: 1026-1030.
  68. Kuroha, T., Tokunaga, H., Kojima, M., Ueda, N., Ishida, T., Nagawa, S., Fukuda, H., Sugimoto-Shirasu, K. and Sakakibara, H. (2009) Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell 21: 3152-3169.
  69. Albinsky, D., Kusano, M., Higuchi, M., Hayashi, N., Kobayashi, M., Fukushima, A., Mori, M., Ichikawa, T., Matsui, K., Kuroda, H., Horii, Y., Tsumoto, Y., Sakakibara, H., Hirochika, H., Matsui, M. and Saito, K. (2009) GC-TOF/MS metabolomic screening applied to the rice-Arabidopsis FOX-hunting system leads to identification of a gene changing nitrogen metabolism. Mol. Plant In press (doi:10.1093/mp/ssp069).
  70. Ikezaki, M., Kojima, M., Sakakibara, H., Kojima, S., Ueno, Y., Machida, C. and Machida, Y. (2010) Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis: KNOX genes control five morphological events. Plant J. 61: 70-82.
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